About that files you can't see, it is most likely that the FTP client you are useing chmods some typ of files automaticly, so the files can't be readen.

chmode - (CHange MODE) is Unix command that changes read, write and execute permissions for a file.

Here are some links for more commands:

http://www.nsftools.com/tips/RawFTP.htm

http://www.cs.colostate.edu/helpdocs/ftp.html

http://www.columbia.edu/acis/eds/dat...n/ftp_com.html

And I perfer SmartFTP as mine FTP client

Download link:

http://www.download.com/SmartFTP/300...=dl&tag=button